Projects

Aaron Ge

Aaron Ge, MD candidate 2028, aspiring cardiologist

Each project opens in under a minute and runs in the page.

Research summary

FastImpute, The Open Bioinformatics Journal, 2026, DOI 10.2174/0118750362421210250929110508
TMA-Grid, BMC Bioinformatics, 2026, DOI 10.1186/s12859-026-06638-2
mSigSDK, BMC Bioinformatics, 2026, DOI 10.1186/s12859-026-06681-z
EHR Embeddings, JAMIA Open, code at the Tensor Lab repository
Browser-Local De-identification of Clinical Text, manuscript draft (Zenodo DOI 10.5281/zenodo.23372242, reserved and not yet public)

FastImpute
Genetic tests leave blanks. FastImpute fills in the missing letters of DNA, fast enough to run at scale.
The Open Bioinformatics Journal, 2026
EHR Embeddings
Turn medical concepts into points on a map, and the map itself starts to answer questions: what sits near what, and why.
University of Maryland Institute for Health Computing; JAMIA Open
ER Triage / SimED
A virtual patient walks into the ER. You ask the questions, make the call, and see how your reasoning holds up.
University of Maryland School of Medicine; ICTR ATIP application, November 2026
De-identification
Paste a messy clinical note and watch every name, date, and ID get stripped out, without the text ever leaving your browser.
Prerounding de-identification manuscript: Ge, Balasubramanian, Almeida, and Seam
mSigSDK
Every cancer carries fingerprints of what damaged its DNA. mSigSDK reads those fingerprints.
National Cancer Institute, NIH; BMC Bioinformatics, 2026
TMA-Grid
One glass slide can hold tissue from hundreds of patients. TMA-Grid lets you explore every core on it.
National Cancer Institute; BMC Bioinformatics, 2026